bacpipe package
Subpackages
- bacpipe.core package
- Submodules
- bacpipe.core.audio_processor module
- bacpipe.core.constants module
- bacpipe.core.experiment_manager module
LoaderLoader.__init__()Loader.classifier_should_be_run()Loader.embeddings()Loader.get_annotations_parquet()Loader.get_audio_files()Loader.get_embedding_dir()Loader.get_preds_array()Loader.predictions()Loader.read_embedding_file()Loader.save_embedding_file()Loader.update_files()Loader.write_metadata_file()
replace_default_kwargs_with_user_kwargs()save_logs()
- bacpipe.core.workflows module
- Module contents
- bacpipe.embedding_evaluation package
- Subpackages
- bacpipe.embedding_evaluation.clustering package
- bacpipe.embedding_evaluation.probing package
- Submodules
- bacpipe.embedding_evaluation.probing.dataset_probe module
- bacpipe.embedding_evaluation.probing.evaluate_probe module
- bacpipe.embedding_evaluation.probing.inference_probe module
- bacpipe.embedding_evaluation.probing.probe module
- bacpipe.embedding_evaluation.probing.train_probe module
- Module contents
- bacpipe.embedding_evaluation.visualization package
- Submodules
- bacpipe.embedding_evaluation.visualization.dashboard module
- bacpipe.embedding_evaluation.visualization.dashboard_utils module
- bacpipe.embedding_evaluation.visualization.tooltips module
- bacpipe.embedding_evaluation.visualization.visualize module
- bacpipe.embedding_evaluation.visualization.visualize_embeddings module
- bacpipe.embedding_evaluation.visualization.visualize_predictions module
- bacpipe.embedding_evaluation.visualization.visualize_spectrograms module
- Module contents
- Submodules
- bacpipe.embedding_evaluation.benchmark module
- bacpipe.embedding_evaluation.label_embeddings module
DefaultLabelsDefaultLabels.__init__()DefaultLabels.audio_file_name()DefaultLabels.continuous_timestamp()DefaultLabels.day_of_year()DefaultLabels.default_classifier()DefaultLabels.fill_remaining_labels()DefaultLabels.generate()DefaultLabels.get_datetimes()DefaultLabels.parent_directory()DefaultLabels.time_of_day()
assign_global_get_paths_function()build_ground_truth_labels_by_file()collect_ground_truth_labels()concatenate_annotation_files()create_Raven_annotation_table()create_default_labels()ensure_audio_files()fill_all_labels_array()filter_annotations_by_minimum_number_of_occurrences()filter_df_by_filename()fit_labels_to_embedding_timestamps()get_default_labels()get_dim_reduc_path_func()get_dt_filename()get_files_if_no_embeds()get_ground_truth()ground_truth_by_model()load_labels_and_build_dict()make_set_paths_func()model_specific_embedding_path()raven_tables_sanity_check()
- Module contents
- Subpackages
- bacpipe.imgs package
- bacpipe.model_pipelines package
- Subpackages
- bacpipe.model_pipelines.feature_extractors package
- Submodules
- bacpipe.model_pipelines.feature_extractors.audiomae module
- bacpipe.model_pipelines.feature_extractors.audioprotopnet module
- bacpipe.model_pipelines.feature_extractors.aves_especies module
- bacpipe.model_pipelines.feature_extractors.avesecho_passt module
- bacpipe.model_pipelines.feature_extractors.bat module
- bacpipe.model_pipelines.feature_extractors.batdetect2_clip_avg module
- bacpipe.model_pipelines.feature_extractors.batdetect2_dets_avg module
- bacpipe.model_pipelines.feature_extractors.beats module
- bacpipe.model_pipelines.feature_extractors.biolingual module
- bacpipe.model_pipelines.feature_extractors.birdaves_especies module
- bacpipe.model_pipelines.feature_extractors.birdmae module
- bacpipe.model_pipelines.feature_extractors.birdnet module
- bacpipe.model_pipelines.feature_extractors.convnext_birdset module
- bacpipe.model_pipelines.feature_extractors.google_whale module
- bacpipe.model_pipelines.feature_extractors.hbdet module
- bacpipe.model_pipelines.feature_extractors.insect459 module
- bacpipe.model_pipelines.feature_extractors.insect66 module
- bacpipe.model_pipelines.feature_extractors.mix2 module
- bacpipe.model_pipelines.feature_extractors.naturebeats module
- bacpipe.model_pipelines.feature_extractors.perch_bird module
- bacpipe.model_pipelines.feature_extractors.perch_v2 module
- bacpipe.model_pipelines.feature_extractors.protoclr module
- bacpipe.model_pipelines.feature_extractors.rcl_fs_bsed module
- bacpipe.model_pipelines.feature_extractors.surfperch module
- bacpipe.model_pipelines.feature_extractors.vggish module
- Module contents
- bacpipe.model_pipelines.feature_extractors package
- Submodules
- bacpipe.model_pipelines.model_utils module
- bacpipe.model_pipelines.runner module
ClassifierEmbedderEmbedder.__init__()Embedder.batch_inference()Embedder.embeddings_using_multithreading()Embedder.get_embeddings_for_audio()Embedder.get_embeddings_from_model()Embedder.get_reduced_dimensionality_embeddings()Embedder.init_dataloader()Embedder.run_dimensionality_reduction_pipeline()Embedder.run_inference_pipeline_sequentially()Embedder.run_inference_pipeline_using_multithreading()
- Module contents
- Subpackages
- bacpipe.tests package